NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000377

Scaffold Ga0209297_1000377


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000377 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29049
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (16.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067415Metagenome125N
F077282Metagenome117N
F086620Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100037728F086620N/AMLTKKQEQGLRILESIVQSQYPFVVSLSKSDKYRLDEYATTMGIILEIDPTTLSKFVGLPFAKKFKETPSIWDYYMRDRDLSYILHLFEDEHQHIMGWQFNKGMEEFITKVYSQLPTNMRVNIYSDSPDYDIPDWARRTLHSPRSLTIDRFFLAPDSKPPKFED
Ga0209297_100037746F077282GAGGLFPVYLSYMKIIITESQKESLDYYQLSNCIKRRIDLDGIDDIVDEAMEEFVSLRDTTEGFMEMVINYTYDRVDEDYGVEKCWGDQYWDEFSAPIKRFISSRYEAKLKEYFENHYN
Ga0209297_10003778F067415N/AMKERFNPFIIRRLKQIDDLVDEVYHEVTPCDYDEDKFYMYFREITNWVVENFVNNNNLGDDDIAIDLHHFIRERYFDEFLDYFDNAQLSCNESLNESEDLGDFNYNNNEEKKLDKKKVTPSDLKKIEFIADYIEMVSGEYLNRSNYKPCFVSVQAGHNKFYIVVIVTDKKYTLEGYEKFINEKLHKTFKGMDIYVLLIDNKYDDGDSIPKSCDDYFNHIPKLPNTITIEF
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