NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1000705

Scaffold Ga0209297_1000705


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1000705 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20569
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (86.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011282Metagenome292Y
F042803Metagenome157Y
F045609Metagenome152Y
F096864Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100070510F011282N/AMKKYKNIVVITGTYINQDGQEKKRYQTIGSVFVDDNDNLKIKMDSMPLVDGGWNGWANCYDLEEKTNTGARDDIPF
Ga0209297_100070515F042803GGAGMLDDGDEGEFITYVIWDEVTVKWSWSAPEDYEMDGYFDIFVFKDGLDITYDIPKLQFKWIEAEVKKYAGYEPPSHQRVASVINGLANNSF
Ga0209297_100070519F045609GAGGMNDRCQANQLLDQHKETHQLSYADTTRALRLTGDYEGDGSARMGEEIPQESERPWENQSINMVVTGLLKHRKTAWISRRR
Ga0209297_10007054F096864AGGMATAKNAKQPARQSVNNRGGDDRYPIPPPPVSRNTPNEDNQVGFLIAFLSLVVVFGLLLPIIGMMYLDILEAKQETKRQQAVVQRLINKAEENK
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