Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1000901 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1000901 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17987
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (53.85%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17987

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (53.85%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F025981	Metagenome	199	Y
F040396	Metagenome / Metatranscriptome	162	Y
F045546	Metagenome	152	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10009011	F040396	N/A	ASGLAQASGVFDPRAANGRLSGKNKALAICEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA
Ga0209297_100090111	F008401	N/A	MEPKTLLTIAETAKLLNCSSGFVRKRIALSEANQQGGWPKTLYINLQPNGAKSLFRVDKEALQTFLRSEGEEANIEEQNAVASSVCSL
Ga0209297_100090118	F025981	N/A	MSIYSVEEKINFPLKETLAILRSIDISLQVLANTQSGGVTTAFISKKAMAERLGVNPVALDKLVYQGLTSKGASGLVEGRHYCKLDPAENNTSNFLYDSAKVLADAWNSFQNYNA
Ga0209297_10009017	F001215	AGGAG	MASTSTNKSPCLIDRPFLRGARINNGTTVVDPTNPAFSDLVQLVRVGDLPTEDAALVEDIFVVSNEGYPNTGGIRTCELIFYVYAPNQSSPSTSTALMLSKVEVGLSGATEGMIQHLELPAINAPVPGVGDTSLLRPIEVGKGEGLYLEKGYILCAGYRGAGPSAVAGGLSPSGITIWAQGGFY
Ga0209297_10009018	F045546	GGCGG	VSRRKGSDNFNFKNKIGIDSVKQISSIKGSDNPKQLLDPLPFERRFRPAVGTKDFSVLSDYNYASLWARWRRGYELSMYTQGASSGLVYSSFKYYVSGTAGVGGYIPGIFFVYPTTRADTRMHMVGIRPRDTFNFLDFGISVAEVTKYDESTYAVKLSQKFGSPISYFHGEVLSNRFNSDGTTKTYGYNNYTVVGVGLDGVMATPSINPNFNTLFLSVAAASSWSVVDSNTMAVPATGPPAVGEFLTTEIRVQCSCQDFLNREGFNLYNTSLKQRYPFTGVQNIDPGSYDAGSSAATRISPSSDYPGASRTFGFIYLNEIYNIPTYSDTATYSDPHLYYFQPKWCKHIYAAFWDLYRKYGMSGSTSYYLPQPNDEPMNEYYREKFEGELQKQTDFLKRNKDFVWWQRYSPALNDLAKHLLYADKYNMVAKTLNFGQLDDLTELQDTNFVLLTFDQFDPLNPAGLPEDTYDGGTYANGELISQPTLILDGGRYSNGELIPPTTYPAFINGGTY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1000901

Overview

Ecosystem & Geography

Associated Families

Sequences