Basic Information | |
---|---|
Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1000901 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 17987 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (53.85%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001215 | Metagenome | 746 | Y |
F008401 | Metagenome | 334 | Y |
F025981 | Metagenome | 199 | Y |
F040396 | Metagenome / Metatranscriptome | 162 | Y |
F045546 | Metagenome | 152 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209297_10009011 | F040396 | N/A | ASGLAQASGVFDPRAANGRLSGKNKALAICEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA |
Ga0209297_100090111 | F008401 | N/A | MEPKTLLTIAETAKLLNCSSGFVRKRIALSEANQQGGWPKTLYINLQPNGAKSLFRVDKEALQTFLRSEGEEANIEEQNAVASSVCSL |
Ga0209297_100090118 | F025981 | N/A | MSIYSVEEKINFPLKETLAILRSIDISLQVLANTQSGGVTTAFISKKAMAERLGVNPVALDKLVYQGLTSKGASGLVEGRHYCKLDPAENNTSNFLYDSAKVLADAWNSFQNYNA |
Ga0209297_10009017 | F001215 | AGGAG | MASTSTNKSPCLIDRPFLRGARINNGTTVVDPTNPAFSDLVQLVRVGDLPTEDAALVEDIFVVSNEGYPNTGGIRTCELIFYVYAPNQSSPSTSTALMLSKVEVGLSGATEGMIQHLELPAINAPVPGVGDTSLLRPIEVGKGEGLYLEKGYILCAGYRGAGPSAVAGGLSPSGITIWAQGGFY |
Ga0209297_10009018 | F045546 | GGCGG | VSRRKGSDNFNFKNKIGIDSVKQISSIKGSDNPKQLLDPLPFERRFRPAVGTKDFSVLSDYNYASLWARWRRGYELSMYTQGASSGLVYSSFKYYVSGTAGVGGYIPGIFFVYPTTRADTRMHMVGIRPRDTFNFLDFGISVAEVTKYDESTYAVKLSQKFGSPISYFHGEVLSNRFNSDGTTKTYGYNNYTVVGVGLDGVMATPSINPNFNTLFLSVAAASSWSVVDSNTMAVPATGPPAVGEFLTTEIRVQCSCQDFLNREGFNLYNTSLKQRYPFTGVQNIDPGSYDAGSSAATRISPSSDYPGASRTFGFIYLNEIYNIPTYSDTATYSDPHLYYFQPKWCKHIYAAFWDLYRKYGMSGSTSYYLPQPNDEPMNEYYREKFEGELQKQTDFLKRNKDFVWWQRYSPALNDLAKHLLYADKYNMVAKTLNFGQLDDLTELQDTNFVLLTFDQFDPLNPAGLPEDTYDGGTYANGELISQPTLILDGGRYSNGELIPPTTYPAFINGGTY |
⦗Top⦘ |