NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001119

Scaffold Ga0209297_1001119


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001119 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15608
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009746Metagenome / Metatranscriptome313N
F029096Metagenome189Y
F048270Metagenome148Y
F058100Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100111910F009526AGGMPATYITGRNLTLSINSVSYADQASTVTLELENNQQVLEVLSGRAYKTVDVSGTLNVELYLDDTSSAGIISALWDAAKSAPDTSLNFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGSVTRT
Ga0209297_100111912F029096AGGAMAEGRTTITIKPDLGDYRGLLKALSVMDKESQGKLKNDVYSISSWVAGGIKTSGYVGARFPAQAAIVAATVRPARDRVPTIYVGGSKGRASGGANAGQLLFGNEFGGERNAKGSLSTFPNGGYKFPERTDREGRGNKGYWIFPTLKVMQPSIKRRWQEACINVLDNWARTS
Ga0209297_100111918F048270N/AMLVNVPSDMSIIYLGQLAAALIAILSLAGMLVKWGIVKPIKAYIGTMTYAIQPQNNGGLSLTDLHKKVDALHLVVEKHLNTSHDTPNFSKCLCESCLTC
Ga0209297_100111921F058100AGGAMNDELYISILKKLYGAWDASLYFAESCEVCSETLVPFDTGVDPYTETRGWMTKCCGVVQTYQQKLAPQI
Ga0209297_10011199F009746N/AMSGPTLANLVSIRTALATSLSAAGRVVYSYPNENITAPAIVLVPGAPYITVGSIGGGRLHIRFDITAIVNAADNQAALANIETLILSITNSISNNYSLLNGWSQPTVQQIGNSDMLISQLSIELVTTN
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