NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001162

Scaffold Ga0209297_1001162


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001162 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15323
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F000506Metagenome / Metatranscriptome1070Y
F007522Metagenome / Metatranscriptome349Y
F021981Metagenome / Metatranscriptome216N
F029438Metagenome188N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100116215F029438N/AMATTRKRKKVNRRVVRKSPDPLSKLDVFMITKHEIYKAAKKAGFSNEIAWFFMQEPNSLPDWIANDKPDAIIPTLDPTEADED
Ga0209297_100116218F007522AGGMTLQEAGLLWVATMVVIIWAYGMYENAKQTHYWRGRKDGWDMHRRMIQNKTDADIN
Ga0209297_100116219F021981N/AMPTSTEKLFNNATAIVHERGVVYGHAIYNMDRIAKSVSAYIDYPLSAHDIPIINILQKISRLAESPGHEDSIVDICAYMAIYKMCIEAEKDDQFEWRVGE
Ga0209297_100116222F000141AGGAMHPQFKCNGCKRNTEFLWLEQLDTPEGFKAYQCMDCGCVGIKNIAEAFHIPDSDICRCDKCGGWKFNTVDCHTCQLIGAK
Ga0209297_10011626F000506AGGAGMAKLKITRANGEVSEHRITPGVEYAFEISKGMGISKALRENEKQTDIFWLAHECLRRANVVVPVFGTEFIDSLETVEVLDEEKN
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