NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001389

Scaffold Ga0209297_1001389


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14092
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F014617Metagenome / Metatranscriptome261Y
F026267Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100138915F000722N/AMAYGWLASVESNNVSETPYPEPGISQETRAAMYPENYSDKYNKVFKQFVDDILTPVLPIDRLENHDILLDELELMYDAHMTIGGQQNRFNASVLRAAINVIRAL
Ga0209297_10013893F014617AGGMIYTIASTRLGIIGDPYVPADGINVAALLSGGFIVEQSTPKPKKPAKTSTEPNEEI
Ga0209297_10013895F026267AGCAGGMKVKLELDLQDGRGTRTMTTNMFVVCEWEKLENRKVSDGKGIGYSDIACWAYHLCKLAGDTVPDNWREWVKQHPNMELTSVDETNPNPTALALTEDN
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