Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1001563 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1001563 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13300
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (3.70%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13300

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (3.70%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F036695	Metagenome	169	N
F049433	Metagenome	146	N
F049442	Metagenome	146	N
F082686	Metagenome	113	N
F083782	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100156311	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVNNKGQRGDGERMLYENNFDAYKLSETIIKKILRPLGLLKTISWGVLIVIDASGNRLVEHSMIKN
Ga0209297_100156314	F049442	N/A	MNKENLEQGLTKLLKTFFTKKYYRDFSDLTVVLNEYEEDADDVDDEGNWSSAESYYFTVYSNNFNGSQPELELYNLARELFGNIIGSKNWIDIEFKNYEN
Ga0209297_100156315	F049433	N/A	MKKFIITEEEKSRILGMHQEHGYNSLNESPSGVGFGPEMNGLKIQKSEQKEQDVEQINDPKIINAVNKVLKKLMEESPKFSTDDTLFSLIEKGDLIKAYRLHRNLNAAVNYVDYELLDDMLNNSETKDSIVKLLPNIKSLLTNYFS
Ga0209297_100156319	F082686	N/A	MGRLILTEDDKNDIKLQYQGSVDKKFYDFLKANVEVESRNVDFFDKPFVLMYVNGKSRLLNNSKKYLVNVLLNAYGDDFPNLNDASKRLTAKKYIDELKKQYFYED
Ga0209297_100156326	F019447	N/A	MKNISKEKLVQALKILYKLWKREHDTDSDWPSKHYIEWEAGVPYNFFKKYSKQLGLGNEADDYYYWMNALEENEDNLDNETLTVDNVIVPKYYTFDVETYEDRVEQVHVTYEGQVEGYFNEDQLNRSFYELGQGEVFDYYDFSETDRDYGDGEGNGIELRSITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLL
Ga0209297_10015633	F083782	N/A	MRYIISETQLDMIIPTPLKRRLDGLQELMYDVMMNNGMSLDADEYNDVEDFVNYVIDIMMYDIFPHTDYEEIPTYEKILIHLLGDKIREFWNENQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1001563

Overview

Ecosystem & Geography

Associated Families

Sequences