NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001661

Scaffold Ga0209297_1001661


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001661 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12801
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023292Metagenome210Y
F038087Metagenome166Y
F061801Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10016614F061801AGGAMKTKPIFKTQASPSYKGYDREIYMSEYTPINKEHYRRLRTCAVVSVGINIFLLLVMVIR
Ga0209297_10016615F023292N/AMNIDQVKEYVTTQLKSYRVKDILDNFSDKEWLSMYKQIAPTKPHEVQRRLIDYAVMELDKFRYVLYKERHYEDLLIDKACLECLKCEDVSCAERKYYVRRPDRKGENNEQ
Ga0209297_10016616F038087GAGGMSDDPIEKEKTMSNKITIVLSINSDTVSRFLFDDYINACADANLMIRYEPYTSDMYAELNDKALEIEKKQALTELENEILNNVACVNGSCED
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