NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001678

Scaffold Ga0209297_1001678


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001678 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12750
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009524Metagenome / Metatranscriptome316Y
F036677Metagenome169N
F048160Metagenome / Metatranscriptome148Y
F082379Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100167810F009524GGTGGMTDLTILDAIATRLGAATPPTGYALRKAYATPPESLPVVPAAILFPGDDSISIGNGNRTTVLTVAIRIYLLPIPRMDDKYRDLYTWRAWLRTVFDGAVTISGNAAQVAVTTTTLGTDTYADQEYLTVEATAEVTVFDTVAFTA
Ga0209297_100167812F082379AGGAGGMETVKIALEGKYAGWTAELRKTVSARILLDLESGEARLALGGFAKLVVTHNFKGLDGKPAEDILDAPVDALTETLAEWVKANQPDPK
Ga0209297_100167813F048160AGGMGHGHSIVPPPEIIFHILAEKFGMWPEQVASLPLDEVLLAWTIHAEMQPKGK
Ga0209297_100167814F036677GGAMPAGVILQGKFDKNYDQLRIGFLKASNPSAFKRLGTFATLNAARTLQKPMRDKAPRGETGRLKKKVLARKARFNNPAAVVGIKGGRNGVFYGWLVVGGAGGQRTTKNGTFSVKGVRPRPFVDQVVKQRSNINRAVESYSKTYAAFYNDEPFRNTILRFRRGNQR
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