NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1001924

Scaffold Ga0209297_1001924


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1001924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11800
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013294Metagenome / Metatranscriptome272N
F023327Metagenome / Metatranscriptome210N
F061680Metagenome / Metatranscriptome131Y
F092029Metagenome / Metatranscriptome107Y
F096907Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100192414F096907N/AMTREEFFDKAVLAAFQGLLAASGHYRDELIKNPCEYVASAAREYAAELTDQLYGPPIEWPKERIF
Ga0209297_100192420F013294N/AMKKLLDKYINNHYHEVRAYTLYFLTKLGSKIEADTVINNSYLHVLTINEDADTEDQVKSYLLNTIKYQILWNTSLSHRDDRVTSMEYKPSEQIDDEQDLQAKILEDKIYSTHKGLIEIYRSQIKDNVHRIVFEAYIDKGYTTARGMAKYFDIPVTSAHYLITEIKQNLRNLQYRYETFSN
Ga0209297_100192425F023327N/AMQIEFMCAVVEDYIYRLKGVQVRIDRRAVATDGRQMAMLMNAYQIAHGDKEHSHI
Ga0209297_10019244F061680N/AMQVTIGIEVAYFDFDDVHGSCEFKITNITEDDYEVELSNVVATKIIGEVELDYILTDTELDQLNEEIIWCIQDTNIVRDMQEFDNDFDEDEWRYDA
Ga0209297_10019248F092029N/AMKYVKYYRMWLEDAVEPEGGTWCYMGADEKNFLWQLNFQYKENEQPETLEQYLQWGYKIQEI
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