NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1002006

Scaffold Ga0209297_1002006


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1002006 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11528
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010601Metagenome301Y
F021491Metagenome / Metatranscriptome218Y
F023804Metagenome208Y
F052462Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100200611F052462AGGAGMTRHIGISVPHRRVDEDDDIQTYKRSWVSLTDEQVHKCIAYGKGGCDIEQTAKNIELKLKGLNYD
Ga0209297_100200614F021491N/AMSVEKKIDEMVLKYILAAEGKARIMSPPDIGKLVREAMHKGAMLGYDSGMKMAQRTHGNELEVAELTVKELTERVKELEMQMIAMQ
Ga0209297_100200615F023804N/AMLESLYRFKCEVEGVTLVCFLEHEPAEFNHGEAPDFPACMNLVNAYCEKIDIAHILMQSIVDHICEEALTQFNSESNE
Ga0209297_10020062F010601N/AMLSQWVSGDLELSQELRAGKVPVCIREDYTVYLEFFRGNLWIHVEIRRWSSGVKKDCLKSIALIENLIGKPIVALIREEDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNKV
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