NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1002199

Scaffold Ga0209297_1002199


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1002199 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10927
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001507Metagenome / Metatranscriptome681Y
F002071Metagenome / Metatranscriptome596Y
F002935Metagenome519Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100219912F002071AGGAGMESTLEIGQTYTTAQSGVVGIIKQIDSHESGVKRILLDVNGSERWTTAK
Ga0209297_10021994F000311AGAAGGMYFELTAKTSKSFNHSFFDAEVMGLDPTAIGPLTFNIGTGSIEKVSNLRDKHNLKESYTSDYEPTGY
Ga0209297_10021996F001507AGGAMTTEYKPYTISEIVTTIYEDNYSHFDFMDNMNGGDCDCSLHLTMKTIEYYWGE
Ga0209297_10021997F002935AGGMRERTRGYEGKLVNGEKLAEIANGIYALQYSNEFSECKVDDLLLIELEEKNVFGDPKYALICSEGVGWEQDTYGCLEVPTNIGPMGLWNGRVFISVDTVKSCMTANIVDISDYIRVFGDRLDSNCSLWQSKMSVAPATIGV
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Institute for Fundamental Biomedical Research
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