NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1003103

Scaffold Ga0209297_1003103


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1003103 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8943
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002044Metagenome / Metatranscriptome599Y
F016265Metagenome / Metatranscriptome248Y
F105165Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10031031F016265N/ATEGQSVVITGCGTPYNGTRVVLADNLGQYTFSQSITNADLLEVNVIPSGIAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYIDTESMAQ
Ga0209297_100310313F002044N/AMANTRKPSKRKKINRRVVRHSPEPLSKLDQHYMALHECYKSARKSGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPTDDEDND
Ga0209297_100310315F105165AGGMYAQIACVYVGSDMTAKDDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN
Ga0209297_10031037F000468GAGGMTVFTPEWKLTVAGTNYTNIAISDIQHQAGRTDIYSQPSPSYMQVTLVALSGQTLPFAINDSFALQVKNSSGTYVNLFGGDITDLTVEVGAFGNVADVINYTILAMGSLVKLARELYSDAVPQDEDGNQIYGILSSVLLASWNDVPAATTWATYSATETWATAGNQGLGEIDQPGLYTMQNRSGTEAPDTIYNIASLIANSAFGYLYEDNAGNIGYADADHRQTYLLANGYVDLDANHALGSGLSTITRSGDIRNDIIINYGSNFGLEKTASSASSIALYGYKGESIQSTIHSAVDAQEVADRYIAQRAFPLPVFQSITFPLTNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISAGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPIGERWNTLSATLTWEYATIVS

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