Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1003103 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1003103 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8943
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8943

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002044	Metagenome / Metatranscriptome	599	Y
F016265	Metagenome / Metatranscriptome	248	Y
F105165	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10031031	F016265	N/A	TEGQSVVITGCGTPYNGTRVVLADNLGQYTFSQSITNADLLEVNVIPSGIAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYIDTESMAQ
Ga0209297_100310313	F002044	N/A	MANTRKPSKRKKINRRVVRHSPEPLSKLDQHYMALHECYKSARKSGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPTDDEDND
Ga0209297_100310315	F105165	AGG	MYAQIACVYVGSDMTAKDDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN
Ga0209297_10031037	F000468	GAGG	MTVFTPEWKLTVAGTNYTNIAISDIQHQAGRTDIYSQPSPSYMQVTLVALSGQTLPFAINDSFALQVKNSSGTYVNLFGGDITDLTVEVGAFGNVADVINYTILAMGSLVKLARELYSDAVPQDEDGNQIYGILSSVLLASWNDVPAATTWATYSATETWATAGNQGLGEIDQPGLYTMQNRSGTEAPDTIYNIASLIANSAFGYLYEDNAGNIGYADADHRQTYLLANGYVDLDANHALGSGLSTITRSGDIRNDIIINYGSNFGLEKTASSASSIALYGYKGESIQSTIHSAVDAQEVADRYIAQRAFPLPVFQSITFPLTNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISAGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPIGERWNTLSATLTWEYATIVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1003103

Overview

Ecosystem & Geography

Associated Families

Sequences