Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1003103 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8943 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000468 | Metagenome | 1102 | Y |
F002044 | Metagenome / Metatranscriptome | 599 | Y |
F016265 | Metagenome / Metatranscriptome | 248 | Y |
F105165 | Metagenome / Metatranscriptome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209297_10031031 | F016265 | N/A | TEGQSVVITGCGTPYNGTRVVLADNLGQYTFSQSITNADLLEVNVIPSGIAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGLLGSYIDTESMAQ |
Ga0209297_100310313 | F002044 | N/A | MANTRKPSKRKKINRRVVRHSPEPLSKLDQHYMALHECYKSARKSGFSPEHAFWLMTEIKTFPNWVVGDGGIIPSIDPTDDEDND |
Ga0209297_100310315 | F105165 | AGG | MYAQIACVYVGSDMTAKDDMLQLAWILLGLGTITWIIHEIKETAFQNGYWKGREAGWQSHRRLINTKVQSDEVFDYDKN |
Ga0209297_10031037 | F000468 | GAGG | MTVFTPEWKLTVAGTNYTNIAISDIQHQAGRTDIYSQPSPSYMQVTLVALSGQTLPFAINDSFALQVKNSSGTYVNLFGGDITDLTVEVGAFGNVADVINYTILAMGSLVKLARELYSDAVPQDEDGNQIYGILSSVLLASWNDVPAATTWATYSATETWATAGNQGLGEIDQPGLYTMQNRSGTEAPDTIYNIASLIANSAFGYLYEDNAGNIGYADADHRQTYLLANGYVDLDANHALGSGLSTITRSGDIRNDIIINYGSNFGLEKTASSASSIALYGYKGESIQSTIHSAVDAQEVADRYIAQRAFPLPVFQSITFPLTNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISAGEFEGYVEGWRWSTRFNELFLTINLSPVAFSQVAMRWNTVPIGERWNTLSATLTWEYATIVS |
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