Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1003140 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8887 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000468 | Metagenome | 1102 | Y |
F002162 | Metagenome / Metatranscriptome | 588 | Y |
F005587 | Metagenome / Metatranscriptome | 395 | Y |
F028151 | Metagenome | 192 | Y |
F037698 | Metagenome / Metatranscriptome | 167 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_100314013 | F028151 | GGA | MNAWLEARDIGFVIMWAIVGLTFVAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKTQSDEVFDYDKQN |
Ga0209297_100314017 | F002162 | AGGA | MPNYEYECDGEGLSIVLDLPMKHEIPCCQVCGAKLRRVYSAVPAIFKGTGWASKK |
Ga0209297_100314019 | F037698 | AGGAG | MCANHDEMTHTINWAYQNKLREQWLLDNPDAQYIGWMSI |
Ga0209297_10031405 | F000468 | AGG | MTVWTPDWKLTVAGVDYTDLTISDIIHQAGRDNIYSQPNPSYLQCTIVALAGQTIDFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGQTGSVAAVIQYTILAMGSIVKLAKEIYNGTIAQDEDGNQIYDLLSSVLLGAWNDVPAGSTWAGYSATETWATAFNLGLGEIDQPGLYTMENRAASPDTIYNIVSQIANSAFGYIYEDSEGNIGYADADHRQTYLIANGYVDLSANHAIGSGLRTITKAADIRNDIFINYGNKFGSQKTATSTSSIALYGYKSESINSVIHSAVDAQEVADRYISLRAFPQPAFDSITFPITNPEIDNSDRDNLLNVFMGMPLNIQDLPAQISNGEFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGERWNTLSNTLTWEYATIVA |
Ga0209297_10031407 | F005587 | AGG | MSYLTKAIKRLNPTAEFSFTDDDYSTIKWDVLDGDAPTQKEINDTIKLIQAEEKTAEVDKAIARATLLERLGITEDEAKLLFA |
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