NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1003140

Scaffold Ga0209297_1003140


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1003140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8887
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F002162Metagenome / Metatranscriptome588Y
F005587Metagenome / Metatranscriptome395Y
F028151Metagenome192Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100314013F028151GGAMNAWLEARDIGFVIMWAIVGLTFVAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKTQSDEVFDYDKQN
Ga0209297_100314017F002162AGGAMPNYEYECDGEGLSIVLDLPMKHEIPCCQVCGAKLRRVYSAVPAIFKGTGWASKK
Ga0209297_100314019F037698AGGAGMCANHDEMTHTINWAYQNKLREQWLLDNPDAQYIGWMSI
Ga0209297_10031405F000468AGGMTVWTPDWKLTVAGVDYTDLTISDIIHQAGRDNIYSQPNPSYLQCTIVALAGQTIDFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGQTGSVAAVIQYTILAMGSIVKLAKEIYNGTIAQDEDGNQIYDLLSSVLLGAWNDVPAGSTWAGYSATETWATAFNLGLGEIDQPGLYTMENRAASPDTIYNIVSQIANSAFGYIYEDSEGNIGYADADHRQTYLIANGYVDLSANHAIGSGLRTITKAADIRNDIFINYGNKFGSQKTATSTSSIALYGYKSESINSVIHSAVDAQEVADRYISLRAFPQPAFDSITFPITNPEIDNSDRDNLLNVFMGMPLNIQDLPAQISNGEFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGERWNTLSNTLTWEYATIVA
Ga0209297_10031407F005587AGGMSYLTKAIKRLNPTAEFSFTDDDYSTIKWDVLDGDAPTQKEINDTIKLIQAEEKTAEVDKAIARATLLERLGITEDEAKLLFA

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