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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027733 Open in IMG/M |
| Scaffold ID | Ga0209297_1003140 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8887 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (78.95%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000468 | Metagenome | 1102 | Y |
| F002162 | Metagenome / Metatranscriptome | 588 | Y |
| F005587 | Metagenome / Metatranscriptome | 395 | Y |
| F028151 | Metagenome | 192 | Y |
| F037698 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209297_100314013 | F028151 | GGA | MNAWLEARDIGFVIMWAIVGLTFVAWIIYEIRDTAFQNGYWKGRADGWNMHRRMTNIKTQSDEVFDYDKQN |
| Ga0209297_100314017 | F002162 | AGGA | MPNYEYECDGEGLSIVLDLPMKHEIPCCQVCGAKLRRVYSAVPAIFKGTGWASKK |
| Ga0209297_100314019 | F037698 | AGGAG | MCANHDEMTHTINWAYQNKLREQWLLDNPDAQYIGWMSI |
| Ga0209297_10031405 | F000468 | AGG | MTVWTPDWKLTVAGVDYTDLTISDIIHQAGRDNIYSQPNPSYLQCTIVALAGQTIDFDINDSLSLQVKNSAGTYVNLFGGDITDITVEVGQTGSVAAVIQYTILAMGSIVKLAKEIYNGTIAQDEDGNQIYDLLSSVLLGAWNDVPAGSTWAGYSATETWATAFNLGLGEIDQPGLYTMENRAASPDTIYNIVSQIANSAFGYIYEDSEGNIGYADADHRQTYLIANGYVDLSANHAIGSGLRTITKAADIRNDIFINYGNKFGSQKTATSTSSIALYGYKSESINSVIHSAVDAQEVADRYISLRAFPQPAFDSITFPITNPEIDNSDRDNLLNVFMGMPLNIQDLPAQISNGEFEGYVEGWRWSTRFNELFLTINLSPVSFSQVAMRWNSVPIGERWNTLSNTLTWEYATIVA |
| Ga0209297_10031407 | F005587 | AGG | MSYLTKAIKRLNPTAEFSFTDDDYSTIKWDVLDGDAPTQKEINDTIKLIQAEEKTAEVDKAIARATLLERLGITEDEAKLLFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |