NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1003834

Scaffold Ga0209297_1003834


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1003834 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7987
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009885Metagenome / Metatranscriptome311Y
F010302Metagenome / Metatranscriptome305N
F015434Metagenome / Metatranscriptome254Y
F048773Metagenome / Metatranscriptome147Y
F074801Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100383413F010302AGCAGMVDVLLNTDDVVVIGPPESIDLLVDIGPQGVRGSKFIVGSGEPNALTASGILFGNTLILNDMYINTAPGENYGYMYQYISQAGANTWVQVLKVSPAIYSAIETIPFTSGAASITIPISNIVTVSGSPLTASNFNVQFRIEGANPIASAMEIPALAGAGTNLVINFDAVQYSGGTWSALTGSKTIHLFISIV
Ga0209297_100383415F048773AGGMPTVFDSDGKAAYVYNVANDTWYQVSGKTDISGTFEWTGLHTHLSNFTTAEASVAKKGTNNFLNPAARDAAIPSPTAGTVCIIRQNAGGSTINELQVYIGGSWITFLPSPAGQTDKFLKSDGTISSWVDAPNALTQVILMMGA
Ga0209297_10038345F074801N/AMGILDNLEATLFPEEAGNGEIIQDEIPFEVEERLNKEAIEKYNERLKYMEEHGI
Ga0209297_10038346F015434GGAGGMESKYPDSWNRHTPKGMSLVDETTKSTKCCDTCECGQTEEQKFNKLMETQTSFEE
Ga0209297_10038348F009885N/AMTTSDWAQFILALLSIGAIVVGSIRWYIQAQIKPIGEAVEDIRSETKTNGGTSMRDEIRAIKSEQEEAKHLRKATSDKLDHMYEVLLDYVSRSK
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