Scaffold Ga0209297

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1003904 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027733 Open in IMG/M

Scaffold ID

Ga0209297_1003904 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7925
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.04%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7925

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.04%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F002038	Metagenome / Metatranscriptome	600	Y
F005588	Metagenome / Metatranscriptome	395	Y
F014261	Metagenome	264	Y
F015597	Metagenome	253	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y
F053888	Metagenome	140	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_100390411	F000957	N/A	MTDFRHLDAMRHLIEELFFVNERIMTGDIVSAKAAIASTNVKKILTHYHEALSEEGATMISLQVYIAAGGWIGISYSFELDGCNFEGSQVPRRI
Ga0209297_100390412	F005588	N/A	MPNPLAHSPDMITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRLDDILDIQRSLIDEQAAEIRLLKARVADQNDAIVRGTAITPDAYPHD
Ga0209297_100390414	F053888	N/A	MNQSSVSFIKGLDGRVLTLARPVLPHAARRLVSVIPQLNALNAAGKSQADAAEAMGVSVGCIRNWITLASIPWSNLNKRGPYNINR
Ga0209297_100390415	F014261	N/A	MKTLIALIVFSWLAVVTFCGPELARAINGAEPVKAKVHHTR
Ga0209297_100390418	F019449	N/A	VTTETFTTIVVPGIASAAYLSASIACFCVHRPALGVMWLCYSVANICLLSTVLRK
Ga0209297_10039042	F098917	N/A	MTNREYLRNILTQLGGEVAALRPTPDDSHRIAGDDLYHLQLAINEAAAELERLSADDIEEAYHIKPIYDRLKAVVAHERVLRNQLDRVALAADNAIDLCNLLSAHVEEANPSDDDAAL
Ga0209297_100390421	F021107	N/A	MITILVSLLIGFLGGFYAGIKNAKSAKVEKAVDILKALKGKD
Ga0209297_10039043	F002038	AGGA	MADIPAGIERIARTVQGQYALLLLLDGYPYVEMTARKHADFLSDLGLWKRKTHPSLARSQVRFFTLAPTGELKELTFTR
Ga0209297_10039044	F015597	N/A	MSDPIEDAFKSLHQGNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHAQRIDADALIEAIEEWQEARNHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209297_1003904

Overview

Ecosystem & Geography

Associated Families

Sequences