NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1005217

Scaffold Ga0209297_1005217


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1005217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6704
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034575Metagenome / Metatranscriptome174N
F035304Metagenome / Metatranscriptome172Y
F040623Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100521710F040623AGAAGGMKVKISLEQTIDIDEAMSNDIGFELYGPSDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISVEYIED
Ga0209297_10052177F034575GGAGGMTLDPYLMKQVDMGMDGADILHGHLKTMMYEAEQQLDLCIEAEEYSEEAMDSMARTEASGYLDALSEVYALTYAIAFAKEDIKNRKEILGE
Ga0209297_10052178F035304N/AMDLNTFREYIRLHAISLEQDLENEDGADSIVPYLEGAIHVSKHYLEVLNG
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