NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1005593

Scaffold Ga0209297_1005593


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1005593 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6431
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000922Metagenome833Y
F001964Metagenome610Y
F002227Metagenome580Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100559315F000922GGAGMPKEVWKRACSLYLAGMDWETIASQLGVNKTTLCKRASLEGVTKVKREMQTVCIQKKTESLESLSAIVRNRLAADAASTLERIDSYDLDGIKDESVRESILGSVAKRSALVFGWSEQGESASVSINLLGSMPDRFAEVVVHGAQAADTV
Ga0209297_10055933F001964GGAGMSRNLFAKPLYKVQISGAIGWSDLKERVVKFETVEFSSRKDAERAAKELNPGEYTQGRIRVVPVELSEDYDVYPTAERSKP
Ga0209297_10055934F002227N/AMKLTIQSKQNAQTIVDLFNAILTGEEAENGAKPLSIYDENKHICSLVAKDGHQILELIIEREEGDKLVQIGEPETL
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