NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1005956

Scaffold Ga0209297_1005956


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1005956 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6214
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F006467Metagenome / Metatranscriptome372Y
F048273Metagenome148N
F056415Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100595610F056415GAGMVVRPYFTSEYQRLEREAHNRERFSFTVAVMAFWVLAVLVFQLVSR
Ga0209297_10059563F048273GAGMTPRQIDQLIERLDSHSAKLDQVRSELDILKGGLVAIGALLFSVLVPLLASLLAK
Ga0209297_10059565F006467AGGMIKRIIVDLVSGAWTILGLLFAVVVLESGPTQETMATLFGGLTVIWLITGPLRWMEE
Ga0209297_10059566F004668GGAGGMSAADHIEKIHEQGWTRINTAPGEWVALVLNTENSAFGGTLWKQGEDGNDYSEGCTEGFPISAALDFDAAGRAIAVLIKKENA
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