NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1006004

Scaffold Ga0209297_1006004


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1006004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6186
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001338Metagenome / Metatranscriptome719Y
F001780Metagenome / Metatranscriptome635Y
F002413Metagenome / Metatranscriptome561Y
F004790Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_100600411F001780N/AVTKRAKLNDLTAPAPDAKSFDAWFFSQTKKEQERMRENGVLPYREMVPSKHVFAIDPNNRAWAVTDTPIERTEVDAFISRDHVGVMLRAFIDALACSDSFYIRRHVELVRWALSLPGCLSSRAIGGMYGRSHFWMRSRAREIQMRVNSDACGMFPHVNAKRDKFKQARR
Ga0209297_10060043F001338N/AMTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVEVEANGEYNGRPQFKYKMTYPKGSQKPTVPDALPPEGVNF
Ga0209297_10060044F002413N/AMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAMGRFARRLDKDVFARHFANWVPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTIYVATAGIGPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMSEGRILAKSWRL
Ga0209297_10060045F004790N/AMEALTPDAVAWARKVGLSPDRVAFLLACPKYTVSKGHRKSDKVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGGDLLTARQRRDEMLAAFDSGQPIPHLNRK

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