NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1006583

Scaffold Ga0209297_1006583


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1006583 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5872
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002055Metagenome / Metatranscriptome598Y
F004599Metagenome / Metatranscriptome431N
F007522Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10065831F002055N/ATRSGDIRNDIIINYGSNFGLEKTASSASSIALYGYKGESIQSTIHSAVDAQAVADRYIAQRAFPLAVFQSITFPLTNPEIDNSDRDNLLGVFMGQPLNIQNLPTQISDGEFEGYVEGWRWSTRFNELFLTLNLSPVAFSQVAMRWNTTPITEAWNTLSNTLTWEYATIVA
Ga0209297_100658311F004599GGAGGMAFNLEDYEDVATLNKWFIQNFPLGRSDISVISHDPEKGYILVQATLWRDAKDAAPAVSNIAFGSRETYIPNMKKFYCEDTATSSLGRAIILLKGSDKTATKDDMRKVENAPVRNLYGKSGNSQTIETALRKAFSDDDKPTDPKAWSVGEVVETITQNKPKQQECSHGLMILKEGTSKTGKPYYGYVCSAPKGEQCDARWHKLTANGIWFYEGGE
Ga0209297_10065839F007522GGAMTLKEAGLLWVATMVAFIWAYGMHESAKQTYYWRGRKDGWDMHRRMIDSKSKSDEVFDYDKN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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