NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1013107

Scaffold Ga0209297_1013107


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1013107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4022
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F029363Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10131073F029363N/AMNNDDNETEQEMTWAAKDLRTLTDCKTEITISRRVTIKTGAIKESWDYQITFGDILNRGAWRWECAQADSLEAAMDITRAQITAQGDEKARELLQLTDAAAKLGLKLVEVTA
Ga0209297_10131074F016936GGAGGMNLELIHAELIRIREALEARPFASGAPAAKPAPSLAKSDEVPMPTEIIPNAGEVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRLGNNGKPFPPRAEDVLLRNAARTIIHQKRGTLPSAAVPTAHVATIDDGDVSF
Ga0209297_10131076F024061AGGGGGMNTGEIKNAAVVNNATEQFRSLLETHFIAIARAAEESFVDEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETESMVDPLQSKLGLVEEAK
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