Scaffold Ga0209297_1023604

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1023604

Scaffold Ga0209297_1023604

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1023604 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2905
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014849	Metagenome / Metatranscriptome	259	Y
F024319	Metagenome / Metatranscriptome	206	Y
F080046	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10236042	F024319	AGG	MTNRIWESRNDYQVESDAQRLGYVACSAGCGRVTAWSLCVMCGGNYTEHNLLGKVVK
Ga0209297_10236043	F080046	AGGAG	MSLSLANKLAQDKFFLPPSKYINHKVVEIISLNDETETVSVTLQKYGISRSANAVKGNLITIELPYAEFKNLNGWGNNK
Ga0209297_10236049	F014849	GGAG	MILDTGTLLAIIIALGGSITVMCLFWKQNAELTRENYRLRNELRKSKLI

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