Scaffold Ga0209297_1026291

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1026291

Scaffold Ga0209297_1026291

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1026291 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2733
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038592	Metagenome	165	Y
F049488	Metagenome	146	N
F065535	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10262915	F049488	AGGAGG	MSKSFFFVIAMWIIFCGFIIYMTELSRKEEVFKFNCSNLIGGWHPDIPKKFAELCLAAKQERSDR
Ga0209297_10262917	F065535	AGG	MTFNEQIDSLLNKQKEVDYLLATETIKEYLVTWPSNVDSQLWNHRLESLLKRLDEKFERTQA
Ga0209297_10262919	F038592	N/A	MITLWIDPLSDDGQELIDDRINQLIKTDYKPANLVNEAVSEFTVKENQQVADYVNENNMQGLGNYIYLKTYDFAYLLATKQAEHEFNNGELNEDF

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