NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1035318

Scaffold Ga0209297_1035318


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1035318 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2314
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F016962Metagenome / Metatranscriptome243Y
F021758Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10353181F016962GAGGMDMIELFIAALVGIFIGWQASKKVHLDGFRQLLRALKVTEEDLLRAMVRVTSEEWQLDAPEGTKDSAVVDVKLEQVGTAIYAYRKSDDQFLAQGSDADSLIERLNQNLTPCRVVVAQEDGADLLQKNNT
Ga0209297_10353184F002052AGGAMREYQFVFNVVCAGEGKPDMARVEEMIDLTMQDLVFDDEFIAALDEKQSVTIQVNLVK
Ga0209297_10353185F021758N/AMKVIKLDRRYSGHGTWTHRTNGGNWYGDDARDRGLVAFYDMRCYMTQMNGPGCFIHEAWALKKAGRAVPEWAWDTDGNVFFRDSALVNFTLAKDRWQ
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