NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1036034

Scaffold Ga0209297_1036034


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1036034 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2288
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008423Metagenome333Y
F035305Metagenome172N
F062755Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10360341F062755N/ANLMKVEKKEVVCIRLPESIKKKVDAEAKKMYLAPSKLVSIIVQKYYEPKN
Ga0209297_10360342F008423N/AMQPLIYQGKQLKLHQRATCLLELLKKAQARQSSIETDLQKWRGATWDNPIKLMNKYEDDYLIKIARMNQIQKRILKSYHFLILDLYEITEDFMLPINLLHF
Ga0209297_10360347F035305N/AMNLAIWEIAPSKTEIDLMAQNVANELSEGIIKAEDIAVKVAVVEAFAKALRSKSEEHIIDFLDKCPKGKYDYLGASLSLKDSQTYDYGAYSEKWAELQVKIDELKAEQKEIEENGKKFERGQIPLKSYKQTYSITLNK
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