NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1038865

Scaffold Ga0209297_1038865


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1038865 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2189
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011386Metagenome / Metatranscriptome291Y
F045756Metagenome152Y
F048982Metagenome / Metatranscriptome147Y
F087194Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10388651F011386GAGMIDITLTTMQGNTRKVKVTSKQEALDFVELFKSTLHENQRVKITCDLLGINGYVQGTK
Ga0209297_10388652F087194GGAMTLDEYKQMVEAQRLSSLAIAMDALRKSKAIQELESEKNK
Ga0209297_10388657F045756AGGGGGMTKYNVLVSYVVEAEDEMRAVFALNKTLMPLSENEIAKFDAFHIEEIN
Ga0209297_10388659F048982AGGAGGMSIELQDVLNVCRQIRGNDRDSGAHYLLGYLWANTSDFEKQRIATLF
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