Scaffold Ga0209297_1073217

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209297_1073217

Scaffold Ga0209297_1073217

Overview

Basic Information
Taxon OID	3300027733 Open in IMG/M
Scaffold ID	Ga0209297_1073217 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1508
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014840	Metagenome	259	Y
F029418	Metagenome	188	Y
F046899	Metagenome	150	Y
F050979	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209297_10732171	F046899	N/A	VQNAKLNNFDPSARLAIQEFEAWQQKVFKKNYRKGWRFFQPDVFDRPTPRSAREAWGGVYRHDDTEKNENKNEKIMIAVVVIVLLLLSTL
Ga0209297_10732174	F014840	AGGTGG	MIPFSYAVVDDEGEVIRQYRWSVKEAKWFTENNPNVKVVKLDKPKVVKEDLFQLVGECLF
Ga0209297_10732175	F050979	AGGAG	MATQQIHKSKRHANPLKTKTGKDRLKALALKVLYEMLDKVQEPGKKRAKIAKEIARREVK
Ga0209297_10732176	F029418	AGGA	MTPEQEAKKRKFEEDLIEVAVAEYYRWVEAHKAVRSEKDARMFYDAMRLGVIRGINFATNQYMQSLKNFEESKTNGNTTDTQE

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