NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1093255

Scaffold Ga0209297_1093255


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1093255 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F059659Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_10932551F059659N/ALPMPEDPKGYTGSHGFQTKDFECALDVYIIDKDGQLLIERRDSEWIEGDPNGKSFLDKMGHVKTIKTWLEPLTNTCTIQFYDFIDSNKTDYDYFITYEAVFINGKISSVKIINFEANENAKRKIRDAEFAKKNKENYQFRQTWQYKCFVKPYNRVISFIFFKTIKVLSFLSTTLYKIERNIRI
Ga0209297_10932552F001840N/AMKEEKDSAFLICDCFSHGLLVEKFEGEEEVHLSLFERGMDGRILRWSERLRWCWQILRYGKPWSDFIILNTDNQKKLKEFL
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