NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1172655

Scaffold Ga0209297_1172655


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1172655 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009746Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0209297_11726552F009526AGGAMPATYITGRNLTLSINSVSYADQASTVTLEMENNQQVLEVLSGRSYKTVDKTATLNVEMYLDDTSSAGIISALWDAAAASPDTSLNFSFDVNGDTFAGKVFPVFPTVGGAATDVLTTSLSFVVEDGSVTRT
Ga0209297_11726553F009746N/AWLMANLATYRANLAATLAAAGRVVYSWPNENITPPAIVLVPGSPYITVSAIGGARCHVRFDITVIVNAADNQAALANIETLIFSVTDLLSNNISFLGGWSQPTVQQIGNADMLISQLNVEMVTTN
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