Basic Information | |
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Taxon OID | 3300027733 Open in IMG/M |
Scaffold ID | Ga0209297_1182128 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 845 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016528 | Metagenome / Metatranscriptome | 246 | N |
F028145 | Metagenome / Metatranscriptome | 192 | N |
F045700 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209297_11821281 | F016528 | N/A | KNPWYIVYMINNNELFAKVLAENPLPYHLGDKVNTNHGIGYISGYNFKDREKIWKFTIRPHGLDNYYTDVETVYGKVE |
Ga0209297_11821283 | F028145 | N/A | MKLFCIFIVNLAVSLFASILLYKLFKVDVSPTIISIGLIVTYMFLPQRFHDWISEK |
Ga0209297_11821284 | F045700 | GGA | MNIGPSQCFECETGTYKDVTVNYFSQLSGGRSCVTKDVTIQCCDTCGAEMLDSKSSKIIESNIERNFPGHYDKWKTKNKPRL |
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