NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209297_1182335

Scaffold Ga0209297_1182335


Overview

Basic Information
Taxon OID3300027733 Open in IMG/M
Scaffold IDGa0209297_1182335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054803Metagenome139Y
F073237Metagenome120Y
F090290Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209297_11823351F090290N/ASGLRIGCMYSPPPENHMSHDAELIQMALLGIEPEFSERRVFGFVAYIIFLGVLFTTLFALDLR
Ga0209297_11823354F073237GAGGMNLQDVIWLETSKGKIGILMVLDWHTEQLHYIMGIASGMNENVDINHIYSGGARLPDYVGAPLFFGDWE
Ga0209297_11823355F054803GGAGMATHKEYEEWKADPAAQQEYKKYLLEEAYKTNPKLDEFIEHFTNQFDQIFKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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