NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000213

Scaffold Ga0209087_1000213


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000213 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37627
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (85.19%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023810Metagenome208N
F033008Metagenome / Metatranscriptome178Y
F043366Metagenome156Y
F104776Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100021315F023810AGGVSIETPIEFELEQYKDRVDAMQIAHEVLRDERDRYKDAAESIHIELEACRLSLKQAESIISRLRTHIAQGIEL
Ga0209087_100021323F043366GGAGMILKNRTVVYVLWADTHLSEGGWLNMDDYEDDGECLVDTVGFLIPIGEPGSKDKHITVWQTICKEEGIHAIHIPVAMVRDMKAIDLTLTV
Ga0209087_100021338F104776AGAAGMSTASALLDRVNRQLLSGTIEERNKLATTVSSSDTSFVMSYDLGGLRAGTVFEVDSELIYIWEAVSGSKTVTVERGYMGTTAATHTAGAVITLNPRFPKAQMLEALNQDIDDLSSPLNGLFRIVSTDLNYNGSDRQIDLTGATSVLDLIDVRLRYLDSDYPVIRMTRLQRDLPTTDFASGFAIVFDESVMAGSLRVRYKAPFSRVSTISDSIQSVANIPTAMEDILELGVMSRVLSVREVKRNFIESQGDTRRSDEVGAGAMRDSFSNILRLRRDRIIAEAAKLARQYPLTIRA
Ga0209087_100021344F033008GAGMAIFRTPTDNYSRKTLPEMFTKGVVLSEEQRLANRLAVHVAPTARGRNVYLLNTGTYTENQPGDMSIVAKVYYGGHDIEVDATEVASLTAAGYGSYISG

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