NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000237

Scaffold Ga0209087_1000237


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000237 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36017
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (61.76%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000601Metagenome996Y
F007261Metagenome / Metatranscriptome354Y
F011285Metagenome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_10002374F000601N/AMTVRKLSIATTIKRYTNENGFSWGINTVMKSLAPDASFDLTSAGGTFIIDRWDSNLPQPTSQEIRDEYIRQQTIAECIEYFKENTGFKGYIKKLFK
Ga0209087_100023754F011285N/AMKYIFMLLLLISCSKDISFDPTVTISKELIKFLYNESVKEGPVME
Ga0209087_100023756F007261N/AMLKPLNSIISLPTYRQYWVHTKPYGHDIVIWADTGKITIQCRWSDMERSNNNRVKRK
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