NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209087_1000692

Scaffold Ga0209087_1000692


Overview

Basic Information
Taxon OID3300027734 Open in IMG/M
Scaffold IDGa0209087_1000692 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20898
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F001817Metagenome / Metatranscriptome630Y
F004788Metagenome / Metatranscriptome423Y

Sequences

Protein IDFamilyRBSSequence
Ga0209087_100069210F001817AGGAGMMQYDVKSAHLSAAGSYYAGRTRLKGIVVSPKISTSVTFEIRDGSATAAVLYTMDLAGNSNPNTFYVIVPGEGILANTGLYLTFSAGSVTGITVFYG
Ga0209087_100069219F000346AGGAGMDKMDLKQDKKMIAGAVHKHEKHMHPGKPMTKLAKGGKTNLQMKQLGRGLAKVANQKKSSFTYKKGG
Ga0209087_10006923F004788GAGGMNALDVLVQQADEKVSQIKDWLADGKADSLEEYKKLCGEVRGLLIMRGYILDLKQTMENSDD
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