NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1000190

Scaffold Ga0209190_1000190


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1000190 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43756
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (77.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009735Metagenome / Metatranscriptome313Y
F016782Metagenome / Metatranscriptome244Y
F017814Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100019011F017814AGGAGMSQQSNFDFNQFNSLTERKPAGLQIYLAQQLLSNALWSFEKYDNPRQEEVRDALNVLKALRAQLKSDAAARATQ
Ga0209190_100019060F009735N/AMAMMTGIVESTSTKDVNTKFGTKPTYSMKVNGTWIKCGFKNPNVEAGYEIQFDGVTGTYGVETKSVEVLRKAVASSAPESTTVAAPTAVAVPKTSYGGYKDKVFPVPPLHGDRAIVRQNALARATDIYIAARGGKPFDLEASTLDLIIQFARKFEAYTAGDLDMAEAMKEDGGTGQTELQLS
Ga0209190_100019066F016782N/AMDAHMMSTLYAAATEALVSETSATSTFEKMIQVAFMHSSIETFAKEVRETERQIKKEFEIGSMPGPWRSAKSVIHSAMKLSLGLVDDNGGFYGKTYLQNKIKEMKTETKEDVTPDAYVNKICKLLAEVPEHIDAKGVHGEVLKFLKGL
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