Basic Information | |
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Taxon OID | 3300027736 Open in IMG/M |
Scaffold ID | Ga0209190_1000190 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 43756 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (77.27%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009735 | Metagenome / Metatranscriptome | 313 | Y |
F016782 | Metagenome / Metatranscriptome | 244 | Y |
F017814 | Metagenome / Metatranscriptome | 238 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209190_100019011 | F017814 | AGGAG | MSQQSNFDFNQFNSLTERKPAGLQIYLAQQLLSNALWSFEKYDNPRQEEVRDALNVLKALRAQLKSDAAARATQ |
Ga0209190_100019060 | F009735 | N/A | MAMMTGIVESTSTKDVNTKFGTKPTYSMKVNGTWIKCGFKNPNVEAGYEIQFDGVTGTYGVETKSVEVLRKAVASSAPESTTVAAPTAVAVPKTSYGGYKDKVFPVPPLHGDRAIVRQNALARATDIYIAARGGKPFDLEASTLDLIIQFARKFEAYTAGDLDMAEAMKEDGGTGQTELQLS |
Ga0209190_100019066 | F016782 | N/A | MDAHMMSTLYAAATEALVSETSATSTFEKMIQVAFMHSSIETFAKEVRETERQIKKEFEIGSMPGPWRSAKSVIHSAMKLSLGLVDDNGGFYGKTYLQNKIKEMKTETKEDVTPDAYVNKICKLLAEVPEHIDAKGVHGEVLKFLKGL |
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