Scaffold Ga0209190_1008521

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209190_1008521

Scaffold Ga0209190_1008521

Overview

Basic Information
Taxon OID	3300027736 Open in IMG/M
Scaffold ID	Ga0209190_1008521 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6289
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (65.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024533	Metagenome	205	Y
F055551	Metagenome	138	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209190_100852110	F055551	N/A	MKVQYMTISSNTKPWLSDEYNMPVLENEEMWSQRVIDETATYLWLDIEREENVNKKEKDQ
Ga0209190_10085214	F081259	AGGAGG	MLKKLIQWFIRPQLSEIEYYISSHNPKNTADVEMLINEFNYKRKLQCF
Ga0209190_10085218	F024533	N/A	MSIQKTCPRCGVSHKKRGPYCSRSCGNVREHTEEDKAVRSQKLTEYHQTPEGAATREKSSRISTAIRKGLDWEEVGVDDYAVGIPDVTDYSADFDDTWQRAEKW

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