NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1025588

Scaffold Ga0209190_1025588


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1025588 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3241
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F098923Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209190_102558810F091592N/ASAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRLTKNRIGKLSDCNCYRDAKEVRSLVRDVKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVN
Ga0209190_10255885F098923GAGMYHEEIDRRHVKALEQLLSEGECIPGKLMGEDAGHLAYIMNQMLYDKFHGHGWELDLLTGRFVRKTGE
Ga0209190_10255889F057984GGAMRNNDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIEVDDETRDTVCHAALREITSDGDALFNYGFNKAIKRFIETKGKKCTKKSSSKKRSRR
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