NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208989_10034269

Scaffold Ga0208989_10034269


Overview

Basic Information
Taxon OID3300027738 Open in IMG/M
Scaffold IDGa0208989_10034269 Open in IMG/M
Source Dataset NameForest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1759
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameEl Dorado National Forest, Georgetown, California, USA
CoordinatesLat. (o)38.88Long. (o)-120.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0208989_100342693F005268AGGAGVNRKRFAAVSRSDEETEEQQVWKALSEAGLVEIRLEEFAERIKDVKRIVTVRLRELLDFNTGIKERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0208989_100342694F003832N/AWPPEEGQIITFKSSAGSETTTLKEVRWGLVWRDFILEDGRVIPEHRISGCPQPQVWRKINEVTDSEREECEERLLSMAGAGMDPRQRDQSFWAELNQYLAYTYLRYNQTGRNVQDTER
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