Scaffold Ga0208989_10052616

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208989_10052616

Scaffold Ga0208989_10052616

Overview

Basic Information
Taxon OID	3300027738 Open in IMG/M
Scaffold ID	Ga0208989_10052616 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1407
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	El Dorado National Forest, Georgetown, California, USA
Coordinates	Lat. (^o)	38.88	Long. (^o)	-120.64	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050738	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208989_100526162	F050738	AGGGGG	MTKVVFAACLLMAGVLAGRLALAKDPTQLLLHKGARVGVVNMLDPEVTHFHTSKVLAQSFFKTQPVNWQVDSMLSDAVTQRLTQLELVPVAMGASDSLMRNRDDYFVNSSVAKGLPREVSRAFAQLASSERLDALIVLAPGLNNSSQAGGAVRRGLPDYLRGWGFITGDTNDKPALFNMTQVLLIGIAPDGAMLHAREWGGPYTDEWSDYVPPDNPKQIPQEQLDRLQPPFGRILARQANRVMDWITVAP

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