Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000022 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000022 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104195
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (89.31%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

104195

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

117 (89.31%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000952	Metagenome / Metatranscriptome	822	Y
F016248	Metagenome	248	Y
F017289	Metagenome / Metatranscriptome	241	Y
F029032	Metagenome	189	Y
F042304	Metagenome / Metatranscriptome	158	Y
F051929	Metagenome / Metatranscriptome	143	Y
F077009	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_1000022100	F051929	AGGA	MTEQRYFAGGQEFLYPHAGDPPAPLDTKVLLLSKGGICTTGYWNATWCLGWLPLPKRNTEKEDIK
Ga0209085_1000022107	F016248	AGGA	MEKELSPLARQLLGANNHVKFFTQQEFDAALALAKAEIIDMAVQATRHAIGIENEACAVLADAHPDVADAIRNRWKRPTEH
Ga0209085_1000022108	F042304	GGAG	MTKLINTYRAVPTAANRAKLQKYLDKHMMAVCMASPEEMAFLKANQFAI
Ga0209085_100002211	F029032	GGA	MIAQVYDPRNMQWDYWCALMSELFAANQLGTAPEDKWQSWADALSGIGRFPGVPDSRGFATWQDWAFALNNALRK
Ga0209085_1000022119	F000952	AGGAG	MATSDTEQKSILVKQNKRMAMGEKLDGQSMGPKGNNKPAGGLSALAKKKK
Ga0209085_1000022120	F077009	AGAAG	VISELIHQIQIRQAELRLSLVTNPVSDHAIYSRIVGEYQGLQWVMDALNVKLAENE
Ga0209085_100002230	F017289	GAGG	MKTKQEIKEEIIELYGATHALNEALNVLHAQHIEKMKQMMALNHMLKDMDDEAAE
Ga0209085_100002234	F051929	GGA	MTDQRYFAGGQEFLYPHAGDPTPPRDTKLLILTRGGVCIVGFWGNEWCLGWLPLPKRNMAKEDMK
Ga0209085_100002241	F016248	AGGAG	MEKELSPLARQLLGTNNHVKFFTQQEFDAALALAKAEIIDMAVQATKHAIGIENEACAELAENCVDIEKLADAIRNRWRRPTEH
Ga0209085_100002250	F000952	AGGAG	MATSDQEQKSILVKQHHRLAMGEKLDGQSMGPKGNSKPAGGLSALVKKKK
Ga0209085_100002276	F029032	N/A	MIAQIYDPRNMEWDYWCALMSELFAANQLGTVPENNWATWADALSGIGRFPGVPDSRGFATWQDWAFALNNALRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000022

Overview

Ecosystem & Geography

Associated Families

Sequences