NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000022

Scaffold Ga0209085_1000022


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104195
Total Scaffold Genes131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (89.31%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F016248Metagenome248Y
F017289Metagenome / Metatranscriptome241Y
F029032Metagenome189Y
F042304Metagenome / Metatranscriptome158Y
F051929Metagenome / Metatranscriptome143Y
F077009Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_1000022100F051929AGGAMTEQRYFAGGQEFLYPHAGDPPAPLDTKVLLLSKGGICTTGYWNATWCLGWLPLPKRNTEKEDIK
Ga0209085_1000022107F016248AGGAMEKELSPLARQLLGANNHVKFFTQQEFDAALALAKAEIIDMAVQATRHAIGIENEACAVLADAHPDVADAIRNRWKRPTEH
Ga0209085_1000022108F042304GGAGMTKLINTYRAVPTAANRAKLQKYLDKHMMAVCMASPEEMAFLKANQFAI
Ga0209085_100002211F029032GGAMIAQVYDPRNMQWDYWCALMSELFAANQLGTAPEDKWQSWADALSGIGRFPGVPDSRGFATWQDWAFALNNALRK
Ga0209085_1000022119F000952AGGAGMATSDTEQKSILVKQNKRMAMGEKLDGQSMGPKGNNKPAGGLSALAKKKK
Ga0209085_1000022120F077009AGAAGVISELIHQIQIRQAELRLSLVTNPVSDHAIYSRIVGEYQGLQWVMDALNVKLAENE
Ga0209085_100002230F017289GAGGMKTKQEIKEEIIELYGATHALNEALNVLHAQHIEKMKQMMALNHMLKDMDDEAAE
Ga0209085_100002234F051929GGAMTDQRYFAGGQEFLYPHAGDPTPPRDTKLLILTRGGVCIVGFWGNEWCLGWLPLPKRNMAKEDMK
Ga0209085_100002241F016248AGGAGMEKELSPLARQLLGTNNHVKFFTQQEFDAALALAKAEIIDMAVQATKHAIGIENEACAELAENCVDIEKLADAIRNRWRRPTEH
Ga0209085_100002250F000952AGGAGMATSDQEQKSILVKQHHRLAMGEKLDGQSMGPKGNSKPAGGLSALVKKKK
Ga0209085_100002276F029032N/AMIAQIYDPRNMEWDYWCALMSELFAANQLGTVPENNWATWADALSGIGRFPGVPDSRGFATWQDWAFALNNALRR

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