NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000233

Scaffold Ga0209085_1000233


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000233 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42575
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (54.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056403Metagenome / Metatranscriptome137Y
F074802Metagenome / Metatranscriptome119N
F083877Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10002331F056403GAGMIMRQLEINSRWKHKTSNDVYVLMAQYSHRVVLKHELTGETIKLTIGHLNPQGFDEYQAL
Ga0209085_100023314F083877GGAGGMTNKVGHEFWVIMQKRRDGEVYADLHKTNQYIYLTYEDALVVFHNSEHYKEYYDIVKMIATLDEEE
Ga0209085_10002336F074802N/AMNSTCTCSRIKIGTTVSDTKNLNPECPLHGTESVWYNDPEQVKKRGERSQRLRELYDTARKARENVNET
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Institute for Fundamental Biomedical Research
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