NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000287

Scaffold Ga0209085_1000287


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37753
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (90.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002597Metagenome / Metatranscriptome544Y
F029973Metagenome186N
F037702Metagenome167Y
F042141Metagenome158Y
F096599Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100028714F002597GAGMALNPAQVYDPRYHTFESWASLMCELYAAQQLEIPTQHTDWRVWGNGLNAIDVFSNEATPRTDQYEDWYYWAEAMVAAVNPAVQTT
Ga0209085_100028728F029973AGGAGMSDRFDLEQAILRADMEGDLNLLFERTCNGPPMSEDDMANALLGLITLNALRQEKLWSIFEDMCHQKMFKDKYEAVG
Ga0209085_100028736F042141GAGGMKINVTLGSDTVDNIFIERLREDLELLETETVPVFSSEPEIEKQHIGALKGAYKQILSYYGEMV
Ga0209085_100028738F037702AGGAGMLSEESIKQIFFYCDQHEPNAVVADDVDIYQFAQKVAAFVQPMIALKEHQRCVKMVNDMNPEVARALENQRPTANDL
Ga0209085_100028757F096599N/AMSEEIETIIYTEEHVRISVDQWDNGGVWLSLQARSASMHTTLTRAEAEQMLKGLQAVLGAEVAA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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