Scaffold Ga0209085

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1000388 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027741 Open in IMG/M

Scaffold ID

Ga0209085_1000388 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32544
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (23.17%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

32544

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (23.17%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044902	Metagenome / Metatranscriptome	153	Y
F055399	Metagenome / Metatranscriptome	138	Y
F068390	Metagenome	124	N
F083645	Metagenome / Metatranscriptome	112	Y
F088162	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_100038823	F055399	N/A	MKSKEEVELQVKRIMGKWYSEPVFSKNKYIEASYLFFWKYYYKLTSGLYYNCKYALQRLFRGYDDLDKWNAAWYIARKTIPVLKAMRDKFHGTSIKWHREDRFGNIEQLTVDEVYAGSNEPGYEGPNAFTEDEWRAVIDDIIFAFQWQIDLDTYSDTRDQQAFTVGEKRQKRGLQLFSIYYKNLWD
Ga0209085_100038826	F083645	N/A	MIIKFGPDKSDAYGNWANDPRVFISRPFFKIIFNNGLGLYILNSFKFNLFPKLYGTFHKTFWEFGFRFIGVNFEVMWNKAFSK
Ga0209085_100038845	F088162	N/A	MMKKQTNKEYSLLVYMKAQHKYTDSEVQLETLCMEKFNGRNVGGGTDLSTGKRDQQFAFEKLTDAKAFLKHPFTRAVILKDYDLVEVD
Ga0209085_100038859	F068390	N/A	MMNETIEQIDWNALYSVGKDSKDFTFDLFDPLLLADNPASQNWTATVSFRGRYGDRANAKKNIIFRSGVPSPRELKASHPYFMEEPMPSVKGVNKENDKLWRKFNRMELRLDEAFLSAFFNAASFEIQSFLIEAGWYGRKFSMYAGCSMCRCSPGYNLKSANGFIKNTAIDVVFKKK
Ga0209085_100038862	F044902	N/A	MSAYIYKLIKPSKSVWMKIQVDNDTTIVRNVYHMKFWYKPYAGMEEDKKLQKKLSREEAKTKELFKDVDVEYAITTYEGDISKPFIHGDFFGCWQVVAWKKLKNIEGEITSYPANTNRILFNDESFSNVWHKAVLADKEDIYDHLTSPGMEVLA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209085_1000388

Overview

Ecosystem & Geography

Associated Families

Sequences