NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000414

Scaffold Ga0209085_1000414


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000414 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31497
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F013741Metagenome / Metatranscriptome268Y
F031399Metagenome / Metatranscriptome182Y
F047566Metagenome149Y
F058788Metagenome / Metatranscriptome134Y
F077013Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100041425F006985AGGMIRETCSCGAEFETDDRDAIQLVKSWRRSHKHSDKPSVAPVSDISILSDNQVALGFQVPDKRYEDDDE
Ga0209085_100041429F058788AGGAMLSTILQALGIAVVAVGAGLVFVPAGVILAGVGVLLFGLALDKGDK
Ga0209085_100041439F031399GAGMNQIILRILLADNTNVEVTTSAGDIVKWETHFDLGIDKLERASHLYYLAWLALTRLGKTGLGFDAWVDGVAGVEVDDPKA
Ga0209085_100041441F077013N/AMAEQTIVYDVKGLLNDLKGLKPGLQREMIKEAKLIAKPIAQTIKSQIPTTAPLSGMRHGGRTGWGVGKPANQVQVKFRSSRSRISAVTPLLSIWVTSPMTAIADIAGKGSFRKARTITNEYAYKDYVRRHRVTSQGKWMVRRLKERNLNNFIYPNVEDSLDDAQDKVKLVIAKYAAMVNRKLG
Ga0209085_100041445F013741N/AVSEPKPTNTSLLLQIVRDIEILKANSIQILQSSQDHETRIRDLEKSVNRNAWIPAVITAVLTSLIVYAITKGFGV
Ga0209085_100041450F047566AGGAGMLSFVKDRSGQIIAVLAALLWRGFGIFLFILGGSMGVGAAVTGSWLTGVLVSFGTLMIGVIGSLGYAIATTGRVTPADVSKSANDAIKKAQEESAKKA
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