NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209085_1000549

Scaffold Ga0209085_1000549


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27135
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001629Metagenome660Y
F002097Metagenome593Y
F010984Metagenome296Y
F047641Metagenome149Y
F072087Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100054910F010984AGGMEIEGAKKTVEQAIGDVKAIKGVWDWFIGLFTTKPTADATKPVAKKKIAAQQQSYNELEAKLFNDIGLQLGTLFDVQQQINDHYHALEEESKNKFNPEQNTSKKAIERVLIELQLEDLMQDVREIMVYAPPQLKNLYSRFLVMHGKIEREQEWARSEMVRRARLARWRKEQDEIWVIETISGVIAVMFISMFFGWLMWQLRSWSIGY
Ga0209085_100054911F002097GGTGGVATTKLVYWILIGVAICIIVGVTSMAYVETLYMRAQLKQEMKELRKLKRELKESK
Ga0209085_100054913F001629N/AMILNQGKVAGGLVEELLEVIHKYDETLYMATVIGALELVKQQLIQDSIEEEE
Ga0209085_100054918F072087AGGMLTYDPRGMEWPLYCSLMAELFSSNDIGTVPEERWRDWVDGINGIGYFAQSAIPDQRLFDSWQEWAEQMVGIMNLQA
Ga0209085_10005498F047641AGGAGMEKLQVSTQLLNQIMGYLGTRPYQEVFQLIEAIQAEAKNQPSVEPTAEDHE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.