NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000809

Scaffold Ga0209085_1000809


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000809 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21569
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (58.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F051684Metagenome143N
F085390Metagenome111Y
F096618Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100080915F001957AGGMNSVDMATNLIFRAKHLQEFTVTTELPDDFAFHGVVPFDLNIVGSILEARVWAVDFDEAVERLHQFLQNDE
Ga0209085_100080917F051684AGGAMYAWMVKYQDVISGFVAGICLMSAADYFAQGNTTYGCLNLFIAAANLLLSGKKIGDNG
Ga0209085_100080919F085390AGGAMSAFLDALAPFVYGFAAGYLWYPLWQLGKKIVNEAYKAKEEWNVKR
Ga0209085_100080927F096618GGAGMSRMSELDIDIQLLLEKGKTAMEIAHELEIPVTWVYETQNETEELQEDLSPFATINS
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