Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1000900 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19797 |
Total Scaffold Genes | 37 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (81.08%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007747 | Metagenome / Metatranscriptome | 345 | Y |
F009066 | Metagenome | 323 | Y |
F020510 | Metagenome / Metatranscriptome | 223 | Y |
F026867 | Metagenome | 196 | Y |
F033352 | Metagenome / Metatranscriptome | 177 | N |
F043823 | Metagenome | 155 | N |
F048834 | Metagenome | 147 | N |
F081048 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209085_100090014 | F009066 | GGAG | VSPEHEKHLAGILSDLVKDVDAKYRKGQEQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAIDKK |
Ga0209085_100090016 | F048834 | AGGAGG | VAIPSIKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGTERKVFSIKIKISQRGGKIGHCRRVPHYRLAAVKTGKT |
Ga0209085_100090017 | F043823 | N/A | MKKAKTNLTIDPKVKRSGERLAKKGGLSLSAYITTLLVKELEKQKRR |
Ga0209085_100090019 | F026867 | GAG | MSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDRWRLIQTGLNSQHRADRLRSAVGKARELKSTSGSQVSWRQIANSLKAEAWLHELREGNGSSD |
Ga0209085_100090025 | F033352 | N/A | MTDLLKFRLIENIEVLACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRTNDFCDDE |
Ga0209085_100090031 | F020510 | AGGCGG | VSLQDLLTMFSARVIGTYTPEQYANCVREARANRMRWGIGQW |
Ga0209085_100090032 | F081048 | AGG | VSVKRLTWQIEILERAKKSLIDGRLIMARSRLDMALHIAKELLKRAQTYQKRDLEKKK |
Ga0209085_100090034 | F007747 | AGGAG | MKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKELKKDPEAVVEYVIAKALKGFEKK |
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