NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1000900

Scaffold Ga0209085_1000900


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1000900 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19797
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (81.08%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007747Metagenome / Metatranscriptome345Y
F009066Metagenome323Y
F020510Metagenome / Metatranscriptome223Y
F026867Metagenome196Y
F033352Metagenome / Metatranscriptome177N
F043823Metagenome155N
F048834Metagenome147N
F081048Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100090014F009066GGAGVSPEHEKHLAGILSDLVKDVDAKYRKGQEQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAIDKK
Ga0209085_100090016F048834AGGAGGVAIPSIKDWAVALDAYVAGDREEVVPPGWYTKIEIAKQWGKSDVYTNKILTRMIKAGGTERKVFSIKIKISQRGGKIGHCRRVPHYRLAAVKTGKT
Ga0209085_100090017F043823N/AMKKAKTNLTIDPKVKRSGERLAKKGGLSLSAYITTLLVKELEKQKRR
Ga0209085_100090019F026867GAGMSLGRLNDIAMKLRQQNQALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKVIPSDFDRWRLIQTGLNSQHRADRLRSAVGKARELKSTSGSQVSWRQIANSLKAEAWLHELREGNGSSD
Ga0209085_100090025F033352N/AMTDLLKFRLIENIEVLACRNSAERVVKALNRGEVEQAKDLARKHEIAWHITDREFQDLNQPHRTNDFCDDE
Ga0209085_100090031F020510AGGCGGVSLQDLLTMFSARVIGTYTPEQYANCVREARANRMRWGIGQW
Ga0209085_100090032F081048AGGVSVKRLTWQIEILERAKKSLIDGRLIMARSRLDMALHIAKELLKRAQTYQKRDLEKKK
Ga0209085_100090034F007747AGGAGMKDLGKITFGKARPAPKQVLVDVTYDAKTAKALHAFGLKELKKDPEAVVEYVIAKALKGFEKK

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