NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1001520

Scaffold Ga0209085_1001520


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1001520 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14241
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (93.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003520Metagenome / Metatranscriptome481Y
F050980Metagenome144Y
F078415Metagenome116N
F083889Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100152018F083889GGAGMSNAHREMPGSGVAYWETEKKSDKGPDYKGFIVLEMDYKAGEKLKLAMWLKNTLQGNTLLSLKEDNWLKRKKQEQDAPVEVTPAYRRAPPRRGQDDDSDLPF
Ga0209085_100152026F050980AGGAGMTDHNHTTRKHPRTLQEAFPRAPEWREHDPHGDEWDYVITIVGIVMIGLTLVVTWLEH
Ga0209085_10015207F003520AGGMAANIPFQAQGKTYKANVTTSSQTLTLTADSPCNQICVANHQPTGSGGQPVYFVLSANSSVTCTVPANASPQYALVSVPGTVKVYTVPYQISSTPIYVAFIGEAASECYFTPGEGL
Ga0209085_10015208F078415GGAMKQANIFLLVFVGGILWGATAKKECSVSDFANIAYSIHNPKERHERIVEWLDDSGSSCTKEQLATIYNNLAQAVGTADTIAIRTKIEKLYERAK
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