NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1001712

Scaffold Ga0209085_1001712


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1001712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13144
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007363Metagenome / Metatranscriptome352Y
F015208Metagenome / Metatranscriptome256Y
F017484Metagenome / Metatranscriptome240Y
F019325Metagenome / Metatranscriptome230Y
F037030Metagenome / Metatranscriptome168Y
F080046Metagenome / Metatranscriptome115Y
F095359Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100171210F095359GGAGGMTIKIGGLGQEISCYCPVCSEKMTHMCIATLGGMHRKGTIRYAWQCNSCELELKSDANGYAKLLKEMENV
Ga0209085_100171211F007363GGAMRSYSITDLLVDQYYAPISLRRRFNGGIINYATKREDTYPASGWQDYAIRYRPANSLQDSWATVTVRVED
Ga0209085_100171212F080046AGGAGMSLSLANKLAQDKFFLPPSKYINHKVVEIISLNDETKTMSVTLQKYGISRSANAVKGNLITLELPYAEFKNLNGWGNNK
Ga0209085_100171213F019325AGGTGGMTTLNETLFSTIVHEFHNGGVQSSYGLDAYTRKELLKFLFSSKGCYCINCISKENK
Ga0209085_100171215F017484AGGAGMSIEIFEMNENGAGWVSLENATPSTKIDLEWAIANNATIQMQCFKCHTPIPKGNVCVNHKNVKGGIYLG
Ga0209085_100171226F037030AGGAGGMNNENIARINTVWTMIFVMIITLIFGEISPAQASMKEMIVYNKNILYINKYNNLVNIKDMINIDYNNILKKRMSKTLYLINDLSSRSTFLMPEYSQELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSRSSSACGAYQYMPSTWNNYKGYKDACKAPEWVQDQKMILELNATYNKYHDWEKAVAAHLLPSRAGNKKTWNKRVPGNPTVRQYVDSVLNKANLVIA
Ga0209085_10017125F015208GAGGMYKITVTYDENKSPDFSFQYADELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK

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