Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1001712 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13144 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (76.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007363 | Metagenome / Metatranscriptome | 352 | Y |
F015208 | Metagenome / Metatranscriptome | 256 | Y |
F017484 | Metagenome / Metatranscriptome | 240 | Y |
F019325 | Metagenome / Metatranscriptome | 230 | Y |
F037030 | Metagenome / Metatranscriptome | 168 | Y |
F080046 | Metagenome / Metatranscriptome | 115 | Y |
F095359 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209085_100171210 | F095359 | GGAGG | MTIKIGGLGQEISCYCPVCSEKMTHMCIATLGGMHRKGTIRYAWQCNSCELELKSDANGYAKLLKEMENV |
Ga0209085_100171211 | F007363 | GGA | MRSYSITDLLVDQYYAPISLRRRFNGGIINYATKREDTYPASGWQDYAIRYRPANSLQDSWATVTVRVED |
Ga0209085_100171212 | F080046 | AGGAG | MSLSLANKLAQDKFFLPPSKYINHKVVEIISLNDETKTMSVTLQKYGISRSANAVKGNLITLELPYAEFKNLNGWGNNK |
Ga0209085_100171213 | F019325 | AGGTGG | MTTLNETLFSTIVHEFHNGGVQSSYGLDAYTRKELLKFLFSSKGCYCINCISKENK |
Ga0209085_100171215 | F017484 | AGGAG | MSIEIFEMNENGAGWVSLENATPSTKIDLEWAIANNATIQMQCFKCHTPIPKGNVCVNHKNVKGGIYLG |
Ga0209085_100171226 | F037030 | AGGAGG | MNNENIARINTVWTMIFVMIITLIFGEISPAQASMKEMIVYNKNILYINKYNNLVNIKDMINIDYNNILKKRMSKTLYLINDLSSRSTFLMPEYSQELNLKTTRVDKRVIISRLANALKSTETGGAGAYYRKSRSSSACGAYQYMPSTWNNYKGYKDACKAPEWVQDQKMILELNATYNKYHDWEKAVAAHLLPSRAGNKKTWNKRVPGNPTVRQYVDSVLNKANLVIA |
Ga0209085_10017125 | F015208 | GAGG | MYKITVTYDENKSPDFSFQYADELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK |
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